Lindsey A Muir, PhD
Research Assistant Professor
Computational Medicine and Bioinformatics
Medical School
[email protected]
Available to mentor
Lindsey A Muir, PhD
Research Assistant Professor
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Recent Publications
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Pickard J, Stansbury C, Surana A, Block A, Muir L, Rajapakse I. PNAS, 2025 Jun 2;Journal ArticleDynamic sensor selection for biomarker discovery
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Loft A, Emont MP, Weinstock A, Divoux A, Ghosh A, Wagner A, Hertzel AV, Maniyadath B, Deplancke B, Liu B, Scheele C, Lumeng C, Ding C, Ma C, Wolfrum C, Strieder-Barboza C, Li C, Truong DD, Bernlohr DA, Stener-Victorin E, Kershaw EE, Yeger-Lotem E, Shamsi F, Hui HX, Camara H, Zhong J, Kalucka J, Ludwig JA, Semon JA, Jalkanen J, Whytock KL, Dumont KD, Sparks LM, Muir LA, Fang L, Massier L, Saraiva LR, Beyer MD, Jeschke MG, Mori MA, Boroni M, Walsh MJ, Patti ME, Lynes MD, Blüher M, Rydén M, Hamda N, Solimini NL, Mejhert N, Gao P, Gupta RK, Murphy R, Pirouzpanah S, Corvera S, Tang S, Das SK, Schmidt SF, Zhang T, Nelson TM, O'Sullivan TE, Efthymiou V, Wang W, Tong Y, Tseng YH, Mandrup S, Rosen ED. Nature Metabolism, 2025 May 1; 7 (5): 875 - 894.Journal ArticleTowards a consensus atlas of human and mouse adipose tissue at single-cell resolution
DOI:10.1038/s42255-025-01296-9 PMID: 40360756 -
Pickard J, Stansbury C, Surana A, Muir L, Bloch A, Rajapakse I. 2025 Jan 17;PreprintDynamic Sensor Selection for Biomarker Discovery.
PMID: 38827457 -
Pickard J, Stansbury C, Surana A, Muir L, Bloch A, Rajapakse I. 2025 Jan 17;PreprintDynamic Sensor Selection for Biomarker Discovery.
PMID: 38827457 -
Cwycyshyn J, Stansbury C, Meixner W, Hoying JB, Muir LA, Rajapakse I. APL Bioengineering, 2024 Dec 1; 8 (4):Journal ArticleA programmable platform for probing cell migration and proliferation
DOI:10.1063/5.0209547 -
Muir L, Rajapakse I, Macedonia C. 2024 May 2;PatentImplantable encapsulated device with controlled perfusion that generates reprogrammed cells
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Stansbury C, Cwycyshyn J, Golts S, Lee H, Pickard J, Meixner W, Rajapakse I, Muir L. 2024 Aug 30; bioRxiv,PreprintTranscriptional landscape of direct reprogramming toward hematopoietic stem cells
DOI:10.1101/2024.08.26.609589 -
Nance SA, Muir L, Delproprosto J, Lumeng CN. Scientific Reports, 2023 Dec 1; 13 (1):Journal ArticleMSR1 is not required for obesity-associated inflammation and insulin resistance in mice
DOI:10.1038/s41598-023-29736-0 PMID: 36788340
Featured News & Stories
Department News
7th Annual Industry+ Day
On February 25, 2026, in a room filled with DCMB students, five biotech industry panelists presented about their career choices.
Department News
Joshua Pickard, Ph.D., developed computational methods and tools for biomarker discovery
On June 13, 2025, he defended his thesis titled “Observability and higher-order methods for biomarker discovery,” and his mentor was professor Indika Rajapakse.
Department News
DCMB 6th Annual Industry Day
On February 26, 2925, in a room filled with DCMB students, five panelists presented about their career choices. They were:
• Gabrielle Dotson, Ph.D., Computational Biology Scientist at bit.bio
• Hani Habra, Ph.D., Michigan State University
• Douglas Maldonado-Torres, M.S, Bioinformatician at Michigan Department of Health & Human Services
• Stephanie Thiede, Ph.D., Senior Computational Biologist II at Tempus AI
• Calin Voichita, Ph.D., Senior Software Engineer at Amazon Web Services (AWS)
Department News
A new grant for the Rajapakse lab
The Rajapakse lab receives a new grant from the Defense Advanced Research Projects Agency (DARPA) to develop an AI assisted foundation model for direct cell reprogramming.
