Lindsey A Muir, PhD
Research Assistant Professor, Computational Medicine and Bioinformatics
Adjunct Lecturer in Computational Medicine and Bioinformatics, Medical School
Email:
[email protected]
Available to mentor
Lindsey A Muir, PhD
Research Assistant Professor
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Recent Publications
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Cwycyshyn J, Stansbury C, Golts S, Lee H, Pickard J, Meixner W, Rajapakse I, Muir LA. 2026 Jul 22;PreprintTranscriptional landscape of direct reprogramming toward the hematopoietic lineage.
DOI:10.1101/2024.08.26.609589 PMID: 42539214 -
Pickard J, Stansbury C, Surana A, Muir LA, Bloch A, Rajapakse I. Proceedings of the National Academy of Sciences, 2025 Oct 6; 122: e2501324122 - e2501324122.Journal ArticleDynamic sensor selection for biomarker discovery
DOI:10.1073/pnas.2501324122 -
Loft A, Emont MP, Weinstock A, Divoux A, Ghosh A, Wagner A, Hertzel AV, Maniyadath B, Deplancke B, Liu B, Scheele C, Lumeng C, Ding C, Ma C, Wolfrum C, Strieder-Barboza C, Li C, Truong DD, Bernlohr DA, Stener-Victorin E, Kershaw EE, Yeger-Lotem E, Shamsi F, Hui HX, Camara H, Zhong J, Kalucka J, Ludwig JA, Semon JA, Jalkanen J, Whytock KL, Dumont KD, Sparks LM, Muir LA, Fang L, Massier L, Saraiva LR, Beyer MD, Jeschke MG, Mori MA, Boroni M, Walsh MJ, Patti ME, Lynes MD, Blüher M, Rydén M, Hamda N, Solimini NL, Mejhert N, Gao P, Gupta RK, Murphy R, Pirouzpanah S, Corvera S, Tang S, Das SK, Schmidt SF, Zhang T, Nelson TM, O’Sullivan TE, Efthymiou V, Wang W, Tong Y, Tseng YH, Mandrup S, Rosen ED. Nature Metabolism, 2025 May 1; 7 (5): 875 - 894.Journal ArticleTowards a consensus atlas of human and mouse adipose tissue at single-cell resolution
DOI:10.1038/s42255-025-01296-9 PMID: 40360756 -
Cwycyshyn J, Stansbury C, Meixner W, Hoying JB, Muir LA, Rajapakse I. APL Bioengineering, 2024 Dec 1; 8 (4):Journal ArticleA programmable platform for probing cell migration and proliferation
DOI:10.1063/5.0209547 -
Nance SA, Muir L, Delproprosto J, Lumeng CN. Scientific Reports, 2023 Dec 1; 13 (1):Journal ArticleMSR1 is not required for obesity-associated inflammation and insulin resistance in mice
DOI:10.1038/s41598-023-29736-0 PMID: 36788340 -
Stansbury C, Dotson G, Pugh H, Rehemtulla A, Rajapakse I, Muir LA. JCI Insight, 2026 Mar 22;Journal ArticleA lipid-associated macrophage lineage rewires the spatial landscape of adipose tissue in early obesity
DOI:10.1172/jci.insight.171701 -
Nance SA, Muir L, Lumeng C. Molecular Metabolism, 2022 Dec 1; 66:Journal ArticleAdipose tissue macrophages: Regulators of adipose tissue immunometabolism during obesity
DOI:10.1016/j.molmet.2022.101642 PMID: 36402403 -
Dotson GA, Chen C, Lindsly S, Cicalo A, Dilworth S, Ryan C, Jeyarajan S, Meixner W, Stansbury C, Pickard J, Beckloff N, Surana A, Wicha M, Muir LA, Rajapakse I. Nature Communications, 2022 Dec 1; 13 (1):Journal ArticleDeciphering multi-way interactions in the human genome
DOI:10.1038/s41467-022-32980-z PMID: 36127324
Featured News & Stories
Department News
7th Annual Industry+ Day
On February 25, 2026, in a room filled with DCMB students, five biotech industry panelists presented about their career choices.
Department News
Joshua Pickard, Ph.D., developed computational methods and tools for biomarker discovery
On June 13, 2025, he defended his thesis titled “Observability and higher-order methods for biomarker discovery,” and his mentor was professor Indika Rajapakse.
Department News
DCMB 6th Annual Industry Day
On February 26, 2925, in a room filled with DCMB students, five panelists presented about their career choices. They were:
• Gabrielle Dotson, Ph.D., Computational Biology Scientist at bit.bio
• Hani Habra, Ph.D., Michigan State University
• Douglas Maldonado-Torres, M.S, Bioinformatician at Michigan Department of Health & Human Services
• Stephanie Thiede, Ph.D., Senior Computational Biologist II at Tempus AI
• Calin Voichita, Ph.D., Senior Software Engineer at Amazon Web Services (AWS)
Department News
A new grant for the Rajapakse lab
The Rajapakse lab receives a new grant from the Defense Advanced Research Projects Agency (DARPA) to develop an AI assisted foundation model for direct cell reprogramming.
