James Bardwell

James Bardwell
Rowena G Matthews Collegiate Professor of Molecular, Cellular and Developmental Biology
Professor of Molecular, Cellular and Developmental Biology
College of Literature, Science, and the Arts
Professor of Biological Chemistry
Medical School
HHMI at University of Michigan
MCDB - BSB Building
1105 N University Room 5022
Ann Arbor, MI 48109
[email protected]
Available to mentor
James Bardwell
James Bardwell
Professor
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  • About

    James C. Bardwell, Ph.D.

    Rowena G. Matthews Collegiate Professor, MCDB HHMI Investigator
    [email protected]
    https://sites.lsa.umich.edu/bardwell-lab/

    Howard Hughes Medical Investigator
    Department of Molecular Cellular Developmental Biology
    Program in Cellular Molecular Biology
    University of Michigan Biophysics
    Department of Biological Chemistry

    Jim received his PhD from the University of Wisconsin in Molecular Biology. He then continued his studies in mRNA Stability at NCI, Bacterial Genetics at Harvard Medical School and Protein Folding at University of Regensburg in Germany. He has been affiliated with University of Michigan since 1996 and was appointed HHMI investigator in 2005. In Jim’s spare time he enjoys biking, kayaking, and giving tours to Natural History Museum visitors of the coral reef and octopus tanks in his office.

    Links

    • Bardwell Lab

    Research Overview

    Proteins start life as linear amino acid sequences and end up as beautifully folded, active structures. Dr. Bardwell’s laboratory focuses on recently discovered machinery that drives protein folding in the cell. Powerful genetic, structural, and biophysical tools are being used to generate a detailed picture of how these folding machines work. Members of the Bardwell lab also use directed evolution to improve protein folding. They do this by asking organisms themselves to solve difficult protein-folding problems. By examining the solutions to these problems, they are better able to understand folding in the cell. Our studies include using techniques such as bacterial genetics, biochemistry, biophysics including NMR, X-ray crystallography, and cell biology, microscopy, RNA-seq, RNAi, and CRISPR knockouts
    As a new project, Dr. Bardwell's lab plans to investigate the regeneration pathways found in jellyfish. Jellyfish possess superb regeneration powers to repair bodily damage. As their fragility has limited their use as a model organism, the labs work will include transferring the CRISPR/Cas9-mediated gene knockout and transgenesis capabilities, that Dr. Brady at MIT developed for Clytia, into the Cassiopee jellyfish. We will focus on regeneration pathways mediated by proteins that have human homologues like Wnt. Applying what we learn about regeneration pathways from these undisputed world-master regenerators may give us some clues about how to turn these pathways back on in humans.

    Recent Publications

    See All Publications
    • Preprint
      Microprotein Regulates G-quadruplex Driven RNA Aggregation
      Sahoo BR, Bhattrai J, Sharma A, Jakob U, Bardwell JC. 2026 Apr 14; bioRxiv, DOI:10.64898/2026.04.10.717804
    • Journal Article
      Genome sequences of nicotine-degrading Pseudomonas and Stutzerimonas strains isolated from nicotine-enriched activated sludge.
      Myers N, Navaratna T, Kim B, Myers KS, Noguera DR, Donohue TJ, Bardwell JCA. Microbiol Resour Announc, 2026 Feb 27; e0135525 DOI:10.1128/mra.01355-25
      PMID: 41758114
    • Journal Article
      Visualization of liquid-liquid phase transitions using a tiny G-quadruplex binding protein
      Sahoo BR, Deng X, Wong EL, Clark N, Yang HJ, Kovalenko A, Subramanian V, Guzman BB, Harris SE, Dehury B, Miyashita E, Damon Hoff J, Kocman V, Saito H, Dominguez D, Plavec J, Bardwell JCA. Nature Communications, 2025 Dec 1; 16 (1): DOI:10.1038/s41467-025-63597-7
      PMID: 41022793
    • Preprint
      Visualization of liquid-liquid phase transitions using a tiny G-quadruplex binding protein.
      Sahoo BR, Deng X, Wong EL, Clark N, Yang HJ, Kovalenko A, Subramanian V, Guzman BB, Harris SE, Dehury B, Miyashita E, Hoff JD, Kocman V, Saito H, Dominguez D, Plavec J, Bardwell JCA. 2025 Sep 5; DOI:10.1101/2023.10.09.561572
      PMID: 39554013
    • Journal Article
      Protein and RNA chaperones
      Sahoo BR, Bardwell JC. Molecular Aspects of Medicine, 2025 Aug 1; 104: DOI:10.1016/j.mam.2025.101384
      PMID: 40664112
    • Journal Article
      BPS2025 - Insights into non-specific RNA binding by a small intrinsically disordered protein
      Usher ET, Mitra R, Dedeoğlu S, Crotteau MJ, Namitz K, Fraser O, Yennawar N, Gadkari VV, Ruotolo BT, Holehouse AS, Salmon L, Showalter SA, Bardwell JC. Biophysical Journal, 2025 Feb 15; 124 (3): 189a - 190a. DOI:10.1016/j.bpj.2024.11.1066
    • Journal Article
      BPS2025 - Insights into non-specific RNA binding by a small, intrinsically disordered protein
      Usher ET, Mitra R, Dedeoğlu S, Crotteau MJ, Namitz K, Fraser O, Yennawar N, Gadkari VV, Ruotolo BT, Holehouse AS, Salmon L, Showalter SA, Bardwell JC. Biophysical Journal, 2025 Feb 15; 124 (3): 240a - 241a. DOI:10.1016/j.bpj.2024.11.1312
    • Journal Article
      Identification of host genetic factors modulating β-lactam resistance in Escherichia coli harbouring plasmid-borne β-lactamase through transposon-sequencing
      Kim H, Bell T, Lee K, Jeong J, Bardwell JCA, Lee C. Emerging Microbes and Infections, 2025 Jan 1; 14 (1): DOI:10.1080/22221751.2025.2493921
      PMID: 40231449