Anthony J Scott, MD, PhD

Anthony Scott
Clinical Assistant Professor of Internal Medicine
Medical School
University of Michigan
1500 E Medical Ctr Dr
Ann Arbor, MI 48109
[email protected]
Available to mentor
Anthony J Scott, MD, PhD
Anthony Scott
Clinical Assistant Professor
  • About
  • Qualifications
  • Center Memberships
  • Research Overview
  • Recent Publications
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  • About

    My clinical interests revolve around the provision of clinical genetics care to the adult population. This includes clinical time spent between Adult Medical Genetics and Cancer Genetics. I initiated a clinical cancer genetics program at the VA Ann Arbor Healthcare System, where I have a partial clinical appointment. I am especially interested in providing cancer genetic counseling services to the Veteran community and performing cancer surveillance of individuals with hereditary cancer syndromes. Additionally, I am coordinating the return of over 2,000 clinically actionable results identified as part of the Michigan Genomics Initiative.

    Qualifications

    • Medical Genetics Fellowship
      University of Michigan Medical School, Ann Arbor, United States
      2019 - 2021
      Clinical Fellowship
    • Internal Medicine Residency
      University of Michigan Medical School, Ann Arbor, United States
      2016 - 2019
      Residency
    • MD, PhD
      Case Western Reserve University, Cleveland, United States
      2008 - 2016
    • BS
      University of Rochester, Rochester, United States
      2004 - 2008

    Center Memberships

    • Center Member
      AI and Digital Health Innovation
    • Center Member
      Rogel Cancer Center

    Research Overview

    My main research interest deals with improving clinical variant interpretation via a high-throughput method called deep mutational scanning to interrogate thousands of variants simultaneously. Primarily, this involves the use of a cellular model to identify pathogenic variants in Lynch Syndrome, a hereditary cancer syndrome, to help reclassify variants of uncertain significance recovered from clinical genetics testing. I am also applying these methods to an endometrial cancer model to determine how different mutations can affect tumor development and/or treatment efficacy. Moreover, I am participating in research collaborations with Ambry Genetics to identify novel variants associated with Peutz-Jeghers and Juvenile Polyposis Syndromes, as well as with Karmanos Cancer Institute to improve variant classification in African-American cancer patients.

    Recent Publications

    See All Publications
    • Proceeding / Abstract / Poster
      A comprehensive, clinically calibrated MAVE (multiplex assay of variant effect) for the human MutLɑ complex genes MLH1 and PMS2
      Vishnopolska SA, Marsh APL, Hernandez F, Jia X, Hemker S, Glick E, Glaser V, Scott A, Kitzman J. 2025 Oct 14;
    • Proceeding / Abstract / Poster
      A multiplex assay of variant effect (MAVE) of MSH6 enables accurate, prospective Lynch Syndrome clinical variant interpretation
      Scott A, Hernandez F, Marsh APL, Kohler K, Jia X, Vishnopolska S, Belhadj S, Varga M, Clark G, Jayakody S, Burugula B, Karam R. 2025 Oct 14;
    • Proceeding / Abstract / Poster
      Systematic resolution of clinical variants in hereditary cancer syndromes using pathway-scale functional assays
      Kitzman J, Vishnopolska S, Hemker S, Jia X, Glick E, Scott A. 2025 Sep 8;
    • Journal Article
      Class II HLA-DRB4 is a predictive biomarker for survival following immunotherapy in metastatic non-small cell lung cancer
      Jiang CY, Zhao L, Green MD, Ravishankar S, Towlerton AMH, Scott AJ, Raghavan M, Cusick MF, Warren EH, Ramnath N. Scientific Reports, 2024 Dec 1; 14 (1): DOI:10.1038/s41598-023-48546-y
      PMID: 38172168
    • Proceeding / Abstract / Poster
      A custom array for genotyping rare predicted loss-of-function variants in the Michigan Genomics Initiative biobank
      Vanderwerff B, Fritsche L, Scott A, Bertucci-Richter E, Patil S, Boehnke M, Zhou X, Zoellner S. 2024 Nov 6;
    • Proceeding / Abstract / Poster
      A custom array for genotyping rare predicted loss-of-function variants in the Michigan Genomics Initiative biobank
      Vanderwerff B, Fritsche L, Scott A, Bertucci-Richter E, Patil S, Boehnke M, Zhou X, Zoellner S. 2024 Nov 6;
    • Proceeding / Abstract / Poster
      A quality improvement initiative to leverage tumor sequencing results of gastrointestinal cancers for potential germline referrals
      Jacobs MF, Scott AJ, Spranger EK. 2024 Jun 19;
    • Proceeding / Abstract / Poster
      Establishing a deep mutational scan for MSH6 missense variant classification
      Scott A, Hernandez F, Marsh A, Jayakody S, Burugula B, Karam R. 2024 Jun 19;