Publications
DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data
Poirion, OB,
Jing, Z,
Chaudhary, K,
Huang, S,
Garmire, LX,
Genome Med, 2021 Jul; DOI:10.1186/s13073-021-00930-x Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data
Klann, JG,
Estiri, H,
Weber, GM,
Moal, B,
Avillach, P,
Hong, C,
Tan, ALM,
Beaulieu-Jones, BK,
Castro, V,
Maulhardt, T,
Geva, A,
Malovini, A,
South, AM,
Visweswaran, S,
Morris, M,
Samayamuthu, MJ,
Omenn, GS,
Ngiam, KY,
Mandl, KD,
Boeker, M,
J Am Med Inform Assoc, 2021 Jul; DOI:10.1093/jamia/ocab018 Quantitative Molecular Positron Emission Tomography Imaging Using Advanced Deep Learning Techniques.
Zaidi, H,
El Naqa, I,
Annu Rev Biomed Eng, 2021 Jul; DOI:10.1146/annurev-bioeng-082420-020343 Real-time mapping of nanopore raw signals
Zhang, H,
Li, H,
Jain, C,
Cheng, H,
Au, KF,
Li, H,
Aluru, S,
Bioinformatics, 2021 Jul; DOI:10.1093/bioinformatics/btab264 Evaluation of predictive model performance of an existing model in the presence of missing data
Li, P,
Taylor, JMG,
Spratt, DE,
Karnes, RJ,
Schipper, MJ,
Stat Med, 2021 Jul; DOI:10.1002/sim.8978 The CT Scan after 50 Years - Continuity and Change
N Engl J Med, 2021 Jul; DOI:10.1056/NEJMp2033374 Automated loss-of-balance event identification in older adults at risk of falls during real-world walking using wearable inertial measurement units
Hauth, J,
Jabri, S,
Kamran, F,
Feleke, EW,
Nigusie, K,
Ojeda, LV,
Handelzalts, S,
Nyquist, L,
Alexander, NB,
Huan, X,
Wiens, J,
Sienko, KH,
Sensors (Basel), 2021 Jul; DOI:10.3390/s21144661 Cardiac rehabilitation in the digital era
Pandey, AC,
Golbus, JR,
Topol, EJ,
Lancet, 2021 Jul; DOI:10.1016/S0140-6736(21)01437-9 Vaxign2: The second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning
Ong, E,
Cooke, MF,
Huffman, A,
Xiang, Z,
Wong, MU,
Wang, H,
Seetharaman, M,
Valdez, N,
He, Y,
Nucleic Acids Res, 2021 Jul; DOI:10.1093/nar/gkab279 Challenges and Opportunities in Social Media Research in Gastroenterology
Chang, JW,
Dellon, ES,
Dig Dis Sci, 2021 Jul; DOI:10.1007/s10620-021-07058-3 Prediction of incident atrial fibrillation in chronic kidney disease the chronic renal insufficiency cohort study
Zelnick, LR,
Shlipak, MG,
Soliman, EZ,
Anderson, A,
Christenson, R,
Lash, J,
Deo, R,
Rao, P,
Afshinnia, F,
Chen, J,
He, J,
Seliger, S,
Townsend, R,
Cohen, DL,
Go, A,
Bansal, N,
Clin J Am Soc Nephrol, 2021 Jul; DOI:10.2215/CJN.01060121 Task group 284 report: magnetic resonance imaging simulation in radiotherapy: considerations for clinical implementation, optimization, and quality assurance
Glide-Hurst, CK,
Paulson, ES,
McGee, K,
Tyagi, N,
Hu, Y,
Balter, J,
Bayouth, J,
Med Phys, 2021 Jul; DOI:10.1002/mp.14695 Use of Telehealth by Surgical Specialties during the COVID-19 Pandemic
Chao, GF,
Li, KY,
Zhu, Z,
McCullough, J,
Thompson, M,
Claflin, J,
Fliegner, M,
Steppe, E,
Ryan, A,
Ellimoottil, C,
JAMA Surg, 2021 Jul; DOI:10.1001/jamasurg.2021.0979 Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection among US Adults Using Data from the US National COVID Cohort Collaborative
Bennett, TD,
Moffitt, RA,
Hajagos, JG,
Amor, B,
Anand, A,
Bissell, MM,
Bradwell, KR,
Bremer, C,
Byrd, JB,
Denham, A,
DeWitt, PE,
Gabriel, D,
Garibaldi, BT,
Girvin, AT,
Guinney, J,
Hill, EL,
Hong, SS,
Jimenez, H,
Kavuluru, R,
Kostka, K,
JAMA Netw Open, 2021 Jul; DOI:10.1001/jamanetworkopen.2021.16901 Administrative Coding in Electronic Health Care Record-Based Research of NAFLD: An Expert Panel Consensus Statement
Hagström, H,
Adams, LA,
Allen, AM,
Byrne, CD,
Chang, Y,
Grønbaek, H,
Ismail, M,
Jepsen, P,
Kanwal, F,
Kramer, J,
Lazarus, JV,
Long, MT,
Loomba, R,
Newsome, PN,
Rowe, IA,
Ryu, S,
Schattenberg, JM,
Serper, M,
Sheron, N,
Simon, TG,
Hepatology, 2021 Jul; DOI:10.1002/hep.31726 Machine Learning: The Next Paradigm Shift in Medical Education
James, CA,
Wheelock, KM,
Woolliscroft, JO,
Acad Med, 2021 Jul; DOI:10.1097/ACM.0000000000003943 Automated detection of acute respiratory distress syndrome from chest X-Rays using Directionality Measure and deep learning features
Reamaroon, N,
Sjoding, MW,
Gryak, J,
Athey, BD,
Najarian, K,
Derksen, H,
Comput Biol Med, 2021 Jul; DOI:10.1016/j.compbiomed.2021.104463 Forest and Trees: Exploring Bacterial Virulence with Genome-wide Association Studies and Machine Learning
Allen, JP,
Snitkin, E,
Pincus, NB,
Hauser, AR,
Trends Microbiol, 2021 Jul; DOI:10.1016/j.tim.2020.12.002 Theta-gamma coupling emerges from spatially heterogeneous cholinergic neuromodulation
Yang, Y,
Gritton, H,
Sarter, M,
Aton, SJ,
Booth, V,
Zochowski, M,
PLoS Comput Biol, 2021 Jul; DOI:10.1371/journal.pcbi.1009235 A pharmacokinetic simulation study to assess the performance of a sparse blood sampling approach to quantify early drug exposure
Sathe, AG,
Brundage, RC,
Ivaturi, V,
Cloyd, JC,
Chamberlain, JM,
Elm, JJ,
Silbergleit, R,
Kapur, J,
Coles, LD,
Clin Transl Sci, 2021 Jul; DOI:10.1111/cts.13004 Tocilizumab Prevents Progression of Early Systemic Sclerosis-Associated Interstitial Lung Disease.
Roofeh, D,
Lin, CJF,
Goldin, J,
Kim, GH,
Furst, DE,
Denton, CP,
Huang, S,
Khanna, D,
focuSSced Investigators, Array,
2021 Jul; DOI:10.1002/art.41668 High performance in risk stratification of intraductal papillary mucinous neoplasms by confocal laser endomicroscopy image analysis with convolutional neural networks (with video)
Machicado, JD,
Chao, W-L,
Carlyn, DE,
Pan, T-Y,
Poland, S,
Alexander, VL,
Maloof, TG,
Dubay, K,
Ueltschi, O,
Middendorf, DM,
Jajeh, MO,
Vishwanath, AB,
Porter, K,
Hart, PA,
Papachristou, GI,
Cruz-Monserrate, Z,
Conwell, DL,
Krishna, SG,
Gastrointest Endosc, 2021 Jul; DOI:10.1016/j.gie.2020.12.054 Emergency Surgical Airway Algorithm for Difficult Airway Management During the COVID-19 Pandemic
Roy, S,
Cramer, JD,
Bier-Laning, C,
Palmieri, PA,
Rassekh, CH,
Brenner, MJ,
Otolaryngol Head Neck Surg, 2021 Jul; DOI:10.1177/0194599820986563 Assessing knowledge, attitudes, and practices towards causal directed acyclic graphs: a qualitative research project
Barnard-Mayers, R,
Childs, E,
Corlin, L,
Caniglia, EC,
Fox, MP,
Donnelly, JP,
Murray, EJ,
Eur J Epidemiol, 2021 Jul; DOI:10.1007/s10654-021-00771-3 Fibrotic lung disease: A molecular glimpse into severe Covid-19?
Spagnolo, P,
Oldham, JM,
EBioMedicine, 2021 Jul; DOI:10.1016/j.ebiom.2021.103470 