Publications
Developing an adaptive mobile intervention to address risky substance use among adolescents and emerging adults: Usability study
Coughlin, LN,
Nahum-Shani, I,
Philyaw-Kotov, ML,
Bonar, EE,
Rabbi, M,
Klasnja, P,
Murphy, S,
Walton, MA,
JMIR Mhealth Uhealth, 2021 Jan; DOI:10.2196/24424 Ontological modeling and analysis of experimentally or clinically verified drugs against coronavirus infection
Liu, Y,
Hur, J,
Chan, WKB,
Wang, Z,
Xie, J,
Sun, D,
Handelman, S,
Sexton, J,
Yu, H,
He, Y,
Sci Data, 2021 Jan; DOI:10.1038/s41597-021-00799-w Navigating a new terrain: How Twitter is changing hematologists
Zaidi, AU,
Glaros, AK,
Weyand, AC,
Blood Adv, 2021 Jan; DOI:10.1182/bloodadvances.2020004030 Going Virtual During a Pandemic: An Academic Psychiatry Department's Experience with Telepsychiatry
Parikh, SV,
Taubman, DS,
Grambeau, M,
Menke, RA,
Blazek, MC,
Sullivan, J,
Severe, J,
Patel, PD,
Dalack, GW,
Psychopharmacol Bull, 2021 Jan; The human phenotype ontology in 2021
Köhler, S,
Gargano, M,
Matentzoglu, N,
Carmody, LC,
Lewis-Smith, D,
Vasilevsky, NA,
Danis, D,
Balagura, G,
Baynam, G,
Brower, AM,
Callahan, TJ,
Chute, CG,
Est, JL,
Galer, PD,
Ganesan, S,
Griese, M,
Haimel, M,
Pazmandi, J,
Hanauer, M,
Harris, NL,
Nucleic Acids Res, 2021 Jan; DOI:10.1093/nar/gkaa1043 jMorp updates in 2020: Large enhancement of multi-omics data resources on the general Japanese population
Tadaka, S,
Hishinuma, E,
Komaki, S,
Motoike, IN,
Kawashima, J,
Saigusa, D,
Inoue, J,
Takayama, J,
Okamura, Y,
Aoki, Y,
Shirota, M,
Otsuki, A,
Katsuoka, F,
Shimizu, A,
Tamiya, G,
Koshiba, S,
Sasaki, M,
Yamamoto, M,
Kinoshita, K,
Nucleic Acids Res, 2021 Jan; DOI:10.1093/nar/gkaa1034 A method to quantify mean hypertension drug dose intensity using healthcare system data
Min, L,
Ha, J-K,
Aubert, CE,
Hofer, TP,
Sussman, JB,
Langa, KM,
Tinetti, M,
Kim, HM,
Maciejewski, ML,
Gillon, L,
Larkin, A,
Chan, C-L,
Kerr, EA,
Bravata, D,
Cushman, WC,
JAMA Netw Open, 2021 Jan; DOI:10.1001/jamanetworkopen.2020.34059 DeepSleep convolutional neural network allows accurate and fast detection of sleep arousal
Li, H,
Guan, Y,
Commun Biol, 2021 Jan; DOI:10.1038/s42003-020-01542-8 Common pathways to Dean of Medicine at U. S. medical schools
Jacobson, CE,
Beeler, WH,
Griffith, KA,
Flotte, TR,
Byington, CL,
Jagsi, R,
PLoS One, 2021 Jan; DOI:10.1371/journal.pone.0249078 Improved diagnostic prediction of the pathogenicity of bloodstream isolates of Staphylococcus epidermidis
VanAken, SM,
Newton, D,
VanEpps, JS,
PLoS One, 2021 Jan; DOI:10.1371/journal.pone.0241457 Natural Language Processing and Assessment of Resident Feedback Quality
Solano, QP,
Hayward, L,
Chopra, Z,
Quanstrom, K,
Kendrick, D,
Abbott, KL,
Kunzmann, M,
Ahle, S,
Schuller, M,
Ötleş, E,
George, BC,
J Surg Educ, 2021 Jan; DOI:10.1016/j.jsurg.2021.05.012 VaximmutorDB: A Web-Based Vaccine Immune Factor Database and Its Application for Understanding Vaccine-Induced Immune Mechanisms
Berke, K,
Sun, P,
Ong, E,
Sanati, N,
Huffman, A,
Brunson, T,
Loney, F,
Ostrow, J,
Racz, R,
Zhao, B,
Xiang, Z,
Masci, AM,
Zheng, J,
Wu, G,
He, Y,
Front Immunol, 2021 Jan; DOI:10.3389/fimmu.2021.639491 IonQuant enables accurate and sensitive label-free quantification with FDR-controlled match-between-runs
Yu, F,
Haynes, SE,
Nesvizhskii, AI,
Mol Cell Proteomics, 2021 Jan; DOI:10.1016/j.mcpro.2021.100077 Deriving Place of Residence, Modified Rankin Scale, and EuroQol-5D Scores from the Medical Record for Stroke Survivors
Sucharew, H,
Kleindorfer, D,
Khoury, JC,
Alwell, K,
Haverbusch, M,
Stanton, R,
Demel, S,
De Los Rios La Rosa, F,
Ferioli, S,
Jasne, A,
Mistry, E,
Moomaw, CJ,
Mackey, J,
Slavin, S,
Star, M,
Walsh, K,
Woo, D,
Kissela, BM,
Cerebrovasc Dis, 2021 Jan; DOI:10.1159/000516571 Machine learning-assisted immune profiling stratifies peri-implantitis patients with unique microbial colonization and clinical outcomes
Wang, C-W,
Hao, Y,
Di Gianfilippo, R,
Sugai, J,
Li, J,
Gong, W,
Kornman, KS,
Wang, H-L,
Kamada, N,
Xie, Y,
Giannobile, WV,
Lei, YL,
Theranostics, 2021 Jan; DOI:10.7150/thno.57775 Natural Language Processing to Estimate Clinical Competency Committee Ratings
Abbott, KL,
George, BC,
Sandhu, G,
Harbaugh, CM,
Gauger, PG,
Ötleş, E,
Matusko, N,
Vu, JV,
J Surg Educ, 2021 Jan; DOI:10.1016/j.jsurg.2021.06.013 The use of electronic health record tools to improve evidence-based treatment of adolescent depression in primary care
Bruni, T,
LaLonde, L,
Maragakis, A,
Lee, J,
Caserta, A,
Kilbourne, AM,
Smith, S,
Orringer, K,
Quigley, J,
McCaffery, H,
Lancaster, B,
Acad Pediatr, 2021 Jan; DOI:10.1016/j.acap.2021.05.022 Improved detection of air trapping on expiratory computed tomography using deep learning
Ram, S,
Hoff, BA,
Bell, AJ,
Galban, S,
Fortuna, AB,
Weinheimer, O,
Wielpütz, MO,
Robinson, TE,
Newman, B,
Vummidi, D,
Chughtai, A,
Kazerooni, EA,
Johnson, TD,
Han, MK,
Hatt, CR,
Galban, CJ,
PLoS One, 2021 Jan; DOI:10.1371/journal.pone.0248902 Commentary on: Trends and challenges of telehealth in an academic institution: The unforeseen benefits of the COVID-19 global pandemic
Santosa, KB,
Cederna, PS,
Aesthet Surg J, 2021 Jan; DOI:10.1093/asj/sjaa272 Non-Rigid Respiratory Motion Estimation of Whole-Heart Coronary MR Images Using Unsupervised Deep Learning
Qi, H,
Fuin, N,
Cruz, G,
Pan, J,
Kuestner, T,
Bustin, A,
Botnar, RM,
Prieto, C,
IEEE Trans Med Imaging, 2021 Jan; DOI:10.1109/TMI.2020.3029205 The Use of eHealth Practices by United States Patients with Self-Reported Glaucoma
Stagg, BC,
Gupta, D,
Ehrlich, JR,
Newman-Casey, PA,
Stein, JD,
Kawamoto, K,
Hess, R,
Ophthalmol Glaucoma, 2021 Jan; DOI:10.1016/j.ogla.2020.07.010 Artificial Intelligence in Neuroradiology: A Smart Prospective Peer Reviewer
Acad Radiol, 2021 Jan; DOI:10.1016/j.acra.2020.06.029 Open-Source Automatic Segmentation of Ocular Structures and Biomarkers of Microbial Keratitis on Slit-Lamp Photography Images Using Deep Learning
Loo, J,
Kriegel, MF,
Tuohy, MM,
Kim, KH,
Prajna, V,
Woodward, MA,
Farsiu, S,
IEEE J Biomed Health Inform, 2021 Jan; DOI:10.1109/JBHI.2020.2983549 Fast Deisotoping Algorithm and Its Implementation in the MSFragger Search Engine
Teo, GC,
Polasky, DA,
Yu, F,
Nesvizhskii, AI,
J Proteome Res, 2021 Jan; DOI:10.1021/acs.jproteome.0c00544 Computational cytology: Lessons learned from Pap test computer-assisted screening
Lew, M,
Wilbur, DC,
Pantanowitz, L,
Acta Cytol, 2021 Jan; DOI:10.1159/000508629 