Publications

Transition From Manual to Automated Planning and Delivery of Volumetric Modulated Arc Therapy Stereotactic Radiosurgery: Clinical, Dosimetric, and Quality Assurance Results
Popple, RA, Brown, MH, Thomas, EM, Willey, CD, Cardan, RA, Covington, EL, Riley, KO, Markert, JM, Bredel, M, Fiveash, JB, Pract Radiat Oncol, 2021 Jan; DOI:10.1016/j.prro.2020.10.013
PMID: 33632630
Understanding the Limit of Open Search in the Identification of Peptides with Post-translational Modifications - A Simulation-Based Study
Dai, J, Yu, F, Zhou, C, Yu, W, IEEE/ACM Trans Comput Biol Bioinform, 2021 Jan; DOI:10.1109/TCBB.2020.2991207
PMID: 32356758
Physician experiences of screen-level features in a prominent electronic health record: Design recommendations from a qualitative study
Khairat, S, Coleman, C, Teal, R, Rezk, S, Rand, V, Bice, T, Carson, SS, Health Informatics J, 2021 Jan; DOI:10.1177/1460458221997914
PMID: 33691524
Individualized Adaptive Radiation Therapy Allows for Safe Treatment of Hepatocellular Carcinoma in Patients With Child-Turcotte-Pugh B Liver Disease
Jackson, WC, Tang, M, Maurino, C, Mendiratta-Lala, M, Parikh, ND, Matuszak, MM, Dow, JS, Cao, Y, Mayo, CS, Ten Haken, RK, Schipper, MJ, Cuneo, KC, Owen, D, Lawrence, TS, Int J Radiat Oncol Biol Phys, 2021 Jan; DOI:10.1016/j.ijrobp.2020.08.046
PMID: 32853708
Veterans Health Administration staff experiences with suicidal ideation screening and risk assessment in the context of COVID-19
Newell, S, Denneson, L, Rynerson, A, Rabin, S, Elliott, V, Bahraini, N, Post, EP, Dobscha, SK, PLoS One, 2021 Jan; DOI:10.1371/journal.pone.0261921
PMID: 34962961
Predicting life expectancy after geriatric hip fracture: A systematic review
Lee, A, Weintraub, S, Xi, IL, Ahn, J, Bernstein, J, PLoS One, 2021 Jan; DOI:10.1371/journal.pone.0261279
PMID: 34910791
Organic synthesis and anti-influenza A virus activity of cyclobakuchiols A, B, C, and D
Shoji, M, Esumi, T, Tanaka, N, Takeuchi, M, Yamaji, S, Watanabe, M, Takahashi, E, Kido, H, Yamamoto, M, Kuzuhara, T, PLoS One, 2021 Jan; DOI:10.1371/journal.pone.0248960
PMID: 33770117
Novel candidates of pathogenic variants of the BRCA1 and BRCA2 genes from a dataset of 3,552 Japanese whole genomes (3.5KJPNv2)
Tokunaga, H, Iida, K, Hozawa, A, Ogishima, S, Watanabe, Y, Shigeta, S, Shimada, M, Yamaguchi-Kabata, Y, Tadaka, S, Katsuoka, F, Ito, S, Kumada, K, Hamanaka, Y, Fuse, N, Kinoshita, K, Yamamoto, M, Yaegashi, N, Yasuda, J, PLoS One, 2021 Jan; DOI:10.1371/journal.pone.0236907
PMID: 33428613
Deep-Learning-Derived Evaluation Metrics Enable Effective Benchmarking of Computational Tools for Phosphopeptide Identification
Jiang, W, Wen, B, Li, K, Zeng, W-F, da Veiga Leprevost, F, Moon, J, Petyuk, VA, Edwards, NJ, Liu, T, Nesvizhskii, AI, Zhang, B, Mol Cell Proteomics, 2021 Jan; DOI:10.1016/j.mcpro.2021.100171
PMID: 34737085
Daily television exposure, parent conversation during shared television viewing and socioeconomic status: Associations with curiosity at kindergarten
Shah, PE, Hirsh-Pasek, K, Kashdan, TB, Harrison, K, Rosenblum, K, Weeks, HM, Singh, P, Kaciroti, N, PLoS One, 2021 Jan; DOI:10.1371/journal.pone.0258572
PMID: 34710118
Neutrophil Dynamics Affect Mycobacterium tuberculosis Granuloma Outcomes and Dissemination
Hult, C, Mattila, JT, Gideon, HP, Linderman, JJ, Kirschner, DE, Front Immunol, 2021 Jan; DOI:10.3389/fimmu.2021.712457
PMID: 34675916
Predicting mortality among patients with liver cirrhosis in electronic health records with machine learning
Guo, A, Mazumder, NR, Ladner, DP, Foraker, RE, PLoS One, 2021 Jan; DOI:10.1371/journal.pone.0256428
PMID: 34464403
An In-House Computer-Aided Design and Computer-Aided Manufacturing Workflow for Maxillofacial Free Flap Reconstruction is Associated With a Low Cost and High Accuracy
Moe, J, Foss, J, Herster, R, Powell, C, Helman, J, Ward, BB, VanKoevering, K, J Oral Maxillofac Surg, 2021 Jan; DOI:10.1016/j.joms.2020.07.216
PMID: 32860748
CGAT: Cell Graph ATtention Network for Grading of Pancreatic Disease Histology Images
Baranwal, M, Krishnan, S, Oneka, M, Frankel, T, Rao, A, Front Immunol, 2021 Jan; DOI:10.3389/fimmu.2021.727610
PMID: 34671349
Telehealth for Cancer Care in Veterans: Opportunities and Challenges Revealed by COVID
Jiang, CY, El-Kouri, NT, Elliot, D, Shields, J, Caram, MEV, Frankel, TL, Ramnath, N, Passero, VA, JCO Oncol Pract, 2021 Jan; DOI:10.1200/OP.20.00520
PMID: 32970512
SNMMI procedure standard/EANM practice guideline on pediatric <sup>18</sup>F-FDG PET/CT for oncology 1.0
Vali, R, Alessio, A, Balza, R, Borgwardt, L, Bar-Sever, Z, Czachowski, M, Jehanno, N, Kurch, L, Pandit-Taskar, N, Parisi, M, Piccardo, A, Seghers, V, Shulkin, BL, Zucchetta, P, Lim, R, J Nucl Med, 2021 Jan; DOI:10.2967/jnumed.120.254110
PMID: 33334912
Predicting olfactory loss in chronic rhinosinusitis using machine learning
Ramakrishnan, VR, Arbet, J, Mace, JC, Suresh, K, Shintani Smith, S, Soler, ZM, Smith, TL, Chem Senses, 2021 Jan; DOI:10.1093/chemse/bjab042
PMID: 34473227
COVID-19 drug repurposing: A review of computational screening methods, clinical trials, and protein interaction assays
Wang, X, Guan, Y, Med Res Rev, 2021 Jan; DOI:10.1002/med.21728
PMID: 32864815
Knowledge, perceptions, and preferred information sources related to covid-19 among central pennsylvania adults early in the pandemic: A mixed methods cross-sectional survey
Van Scoy, LJ, Miller, EL, Snyder, B, Wasserman, E, Chinchilli, VM, Zgierska, AE, Rabago, D, Lennon, CL, Lipnick, D, Toyobo, O, Ruffin, MT, Lennon, RP, Ann Fam Med, 2021 Jan; DOI:10.1370/afm.2674
PMID: 33985977
Wearable sensor-driven responsive deep brain stimulation for essential tremor
Cernera, S, Alcantara, JD, Opri, E, Cagle, JN, Eisinger, RS, Boogaart, Z, Pramanik, L, Kelberman, M, Patel, B, Foote, KD, Okun, MS, Gunduz, A, Brain Stimul, 2021 Jan; DOI:10.1016/j.brs.2021.09.002
PMID: 34547503
Self-directed technology to improve urinary symptoms
Ann Fam Med, 2021 Jan; DOI:10.1370/afm.2659
PMID: 33685870
Pre-statistical harmonization of cognitive measures across six population-based cohorts ARIC, CARDIA, CHS, FHS, MESA, and NOMAS
Briceño, EM, Gross, AL, Giordani, BJ, Manly, JJ, Gottesman, RF, Elkind, MSV, Sidney, S, Hingtgen, S, Sacco, RL, Wright, CB, Fitzpatrick, A, Fohner, AE, Mosley, TH, Yaffe, K, Levine, DA, J Alzheimers Dis, 2021 Jan; DOI:10.3233/JAD-210459
PMID: 34459397
Development and evaluation of deep learning–based segmentation of histologic structures in the kidney cortex with multiple histologic stains
Jayapandian, CP, Chen, Y, Janowczyk, AR, Palmer, MB, Cassol, CA, Sekulic, M, Hodgin, JB, Zee, J, Hewitt, SM, O'Toole, J, Toro, P, Sedor, JR, Barisoni, L, Madabhushi, A, Nephrotic Syndrome Study Network (NEPTUNE), Array, Kidney Int, 2021 Jan; DOI:10.1016/j.kint.2020.07.044
PMID: 32835732
Special Commentary: Using Clinical Decision Support Systems to Bring Predictive Models to the Glaucoma Clinic
Stagg, BC, Stein, JD, Medeiros, FA, Wirostko, B, Crandall, A, Hartnett, ME, Cummins, M, Morris, A, Hess, R, Kawamoto, K, Ophthalmol Glaucoma, 2021 Jan; DOI:10.1016/j.ogla.2020.08.006
PMID: 32810611
Restoring upper extremity function with brain-machine interfaces
Nason, SR, Mender, MJ, Letner, JG, Chestek, CA, Patil, PG, Int Rev Neurobiol, 2021 Jan; DOI:10.1016/bs.irn.2021.06.001
PMID: 34446245