Microbiome Core

A person with gray hair and a white lab coat looks intently through a microscope in a cluttered lab.

The Microbiome Core offers microbial community profiling of bacteria and fungi, as well as whole-genome sequencing. Library generation can be carried out on samples from a variety of sources, including swabs, tissue, soil, microbial cultures, and fecal samples. The processing of high-throughput sample sets is automated, using epMotion liquid handlers. Libraries are sequenced on the Illumina MiSeq i100 platform.

 

Contact Us

Explore the Microbiome Core

Project Consultation

Do you need a quote or quick consultation? Please fill out this form, and a Core staff member will follow up with you within 1-2 business days.

Pricing Estimator

Get an idea of project cost

Project Submissions

Ready to submit a project? Please submit a request through MiCores.

FAQs

Check out our FAQs for quick answers.

HOW WE SERVE YOUR RESEARCH NEEDS

MiSeq equipment

Microbial Community Analysis

We offer services to profile a range of microbial community compositions.

Microbial Community Analysis
Blue DNA Cells

Microbial Genome Sequencing

We offer two services for sequencing of bacterial genomes on the Illumina MiSeq Platform.

Microbial Genome Sequencing
Lab tech looking at epMotion liquid handlers

Microbial DNA Extraction

Our DNA extraction service has been automated for high-throughput using the Eppendorf EpMotion liquid handling and KingFisher automated purification systems.

Microbial DNA Extraction
MALDI Isolate ID

MALDI - Microbial Isolate Identification

MALDI Biotypers are used in research, by industry or in clinical applications to effectively identify purified microbial isolates at their genus, species or strain levels.

MALDI - Microbial Isolate Identification
Lens in front of of series of multi-color images

Strain Collection Database

StrainDB is a searchable database of microbial strains at the University of Michigan.

Strain Collection Database
MicrobiomeCoreAddSerHP

Additional Services

Discover additional services available for your research.

Additional Services

Research Support & Core Policies

We are working on making the Microbiome Core more visible to the greater research community and funding bodies. We ask clients to support our team by acknowledging our services in their publications with a sentence such as:

" DNA extraction, library prep, and next-generation sequencing were carried out by the University of Michigan's Microbiome Core (RRID SCR_02680)." 

We appreciate your help with this endeavour.

The Microbiome Core is happy to provide letters of support for grant applications. Please email [email protected] to request a letter. Please include your name and affiliation, the type of application you are submitting, the title of your proposal, the Core services you will be using, and a brief description of your project. 

  • The user agrees to include/acknowledge the use of Microbiome Core services in any publications that result from this work. Please see the ‘Acknowledge Us’ section.
  • DNA samples will be kept for 90 days (~3 months) after sequencing before Core staff will dispose of them.  If requested, the Core will return any purified DNA samples for the cost of shipping (where applicable).
  • The user is responsible for downloading all data files provided by the Core. The sequence data will be maintained on Dropbox for 6 months after which it will be archived. There is a fee of $75 for retrieving and sending archived data.
  • The user is in compliance with all institutional, state, and federal rules governing the performance of research involving human or animal samples.
  • Requests for processing samples not specified at the time of the submission may require additional turnaround time and fees above initial estimates.

Our Team

Tom Schmidt, PhD

Thomas Schmidt, PhD

Professor of Internal Medicine
Professor of Microbiology and Immunology
Medical School and Professor of Ecology and Evolutionary Biology
College of Literature, Science, and the Arts
Karrie K Black, MBA, CRA

Karrie K Black, MBA, CRA

Financial Administrator
Christina Cartaciano, MS

Christina Cartaciano, MS

Microbiome Core Lab Specialist
University of Michigan block M logo

Kyle Stamper

Microbiome Core Lab Specialist

Scientific Advisory Board Members

Robert Dickson

Robert Pickett Dickson, MD

Galen B Toews M.D. Legacy Professor of Pulmonary and Critical Care Medicine
Professor of Internal Medicine
Professor of Microbiology and Immunology
Associate Fellowship Director, Pulmonary and Critical Care Medicine
Medical School
Eric C Martens, PhD

Eric C Martens, PhD

Professor of Microbiology and Immunology
Medical School

Contact Us

If you would like to discuss a project, feel free to contact us.

The Microbiome Core is housed in the Medical Science Research Building I (MSRB-I, Room 1504).