Microbiome Core
The Microbiome Core offers microbial community profiling of bacteria and fungi, as well as whole-genome sequencing. Library generation can be carried out on samples from a variety of sources, including swabs, tissue, soil, microbial cultures, and fecal samples. The processing of high-throughput sample sets is automated, using epMotion liquid handlers. Libraries are sequenced on the Illumina MiSeq i100 platform.
Explore the Microbiome Core
HOW WE SERVE YOUR RESEARCH NEEDS
Microbial Community Analysis
We offer services to profile a range of microbial community compositions.
Microbial Genome Sequencing
We offer two services for sequencing of bacterial genomes on the Illumina MiSeq Platform.
Microbial DNA Extraction
Our DNA extraction service has been automated for high-throughput using the Eppendorf EpMotion liquid handling and KingFisher automated purification systems.
MALDI - Microbial Isolate Identification
MALDI Biotypers are used in research, by industry or in clinical applications to effectively identify purified microbial isolates at their genus, species or strain levels.
Strain Collection Database
StrainDB is a searchable database of microbial strains at the University of Michigan.
Additional Services
Discover additional services available for your research.
Research Support & Core Policies
We are working on making the Microbiome Core more visible to the greater research community and funding bodies. We ask clients to support our team by acknowledging our services in their publications with a sentence such as:
" DNA extraction, library prep, and next-generation sequencing were carried out by the University of Michigan's Microbiome Core (RRID SCR_02680)."
We appreciate your help with this endeavour.
The Microbiome Core is happy to provide letters of support for grant applications. Please email [email protected] to request a letter. Please include your name and affiliation, the type of application you are submitting, the title of your proposal, the Core services you will be using, and a brief description of your project.
- The user agrees to include/acknowledge the use of Microbiome Core services in any publications that result from this work. Please see the ‘Acknowledge Us’ section.
- DNA samples will be kept for 90 days (~3 months) after sequencing before Core staff will dispose of them. If requested, the Core will return any purified DNA samples for the cost of shipping (where applicable).
- The user is responsible for downloading all data files provided by the Core. The sequence data will be maintained on Dropbox for 6 months after which it will be archived. There is a fee of $75 for retrieving and sending archived data.
- The user is in compliance with all institutional, state, and federal rules governing the performance of research involving human or animal samples.
- Requests for processing samples not specified at the time of the submission may require additional turnaround time and fees above initial estimates.
Our Team
Thomas Schmidt, PhD
Professor of Microbiology and Immunology
Medical School and Professor of Ecology and Evolutionary Biology
College of Literature, Science, and the Arts
Karrie K Black, MBA, CRA
Christina Cartaciano, MS
Kyle Stamper
Scientific Advisory Board Members
Robert Pickett Dickson, MD
Professor of Internal Medicine
Professor of Microbiology and Immunology
Associate Fellowship Director, Pulmonary and Critical Care Medicine
Medical School
Eric C Martens, PhD
Medical School
Contact Us
The Microbiome Core is housed in the Medical Science Research Building I (MSRB-I, Room 1504).
Member of the Microbiome Centers Consortium