Functional Analytics Core
Providing innovative, state-of-the art services
The Functional Analytics Core (FAC) provides support and services to accelerate and enhance the effectiveness of basic and translational research in the field of cutaneous biology.
Services
We provide systems biology analyses, disease- and cytokine-specific gene expression profiling, and bioinformatics training to support skin-related research:
- Service 1: Disease case/comparison of repository genomics (Single cell RNA-seq) to aid in creating disease mouse models with bioinformatics analysis
- Service 2: Disease case/comparison of genomics in Rodent vs repository human genomics (single cell RNA-seq) to aid in creating disease mouse models with bioinformatics analysis
- Service 3: Disease case/comparison of genomics (Spatial RNA-seq) in human tissue with bioinformatics analysis
- Service 4: Disease case/comparison of genomics (Single cell RNA-seq) in human tissue and blood with bioinformatics analysis
- Service 5: Consultation with UM-SRC Functional Analytics Core
- Service 6: Protocol Development UM-SRC Functional Analytics Core
For current FAC Service Recharge rates, please email [email protected].
CRISPR/Cas9 Genome Editing
We provide CRISPR/Cas9 genome editing services in keratinocytes for generation of both knock-out and knock-in keratinocytes, as well as functional characterization of mutant keratinocyte lines.
| CRISPR/Cas9 edited KO/KI Lines (XX lines) | |||
| ADH5 | HDAC1 | KRT16 | STAT1 |
| AIM2 | IFNB1 | KRT17 | STAT2 |
| AP1B1 | IFNK | KRT5 | STAT3 |
| AP1S3 | IFNLR1 | KRT8 | TEX264 |
| ATP2A2 | IL17RA | MAP3K14 | TMC6 |
| ATP2C1 | IL17RC | MOKO1 (Cont KO) | TMC8 |
| BATF2 | IL17RD | MOKO7 (Cont KO) | TMEM173 |
| BNIP3L | IL17RE | MOKO8 (Cont KO) | TNFAIP3 |
| CACFD1 | IL36A | MOKO9 (Cont KO) | TP53 |
| CARD14 | IL36B | MTHFR | TYK2 |
| CARD8 | IL36G | MYD88 | VSIR |
| CD109 | IL36R/IL1RL2 | NLRP1 | WWC1 |
| CDKN2A (NHK) | IL36RN | PAR1 | XPC |
| COL8A1 (FBs) | IRAK1 | PAR2 | ZBP1 |
| CSNK1E | IVL | PLA2G2F | ZC3H12C |
| CYP27C1 | JAK1 | PPARG | FABP5 |
| DSG1 | JAK2 | RAB15 | KMT2A |
| Edn1 (Mouse) | JAK3 | RAC1 | CTNNA1 |
| GSDMD | KLK6 | RUNX1 (FBs) | SPTLC3 |
| GSDME | KRT14 | SLC46A2 | IFNL1 |
| Double KO lines | Stop Codon | |
| IL17RA/IL17RD | CASZ1 | |
| TMEM173/VSIR |
Skin Genes Query
The U-M SRC Skin Genes Query supports comparison of normal and disease gene expression in human and mouse skin utilizing datasets supplied by SRC members. This tool is available to all UM-SRC members and requires University of Michigan level-1 account verification. If you are unable to access this tool and are a current UM SRC member, please email: [email protected] for assistance.
Skin Genes Query (SRC Members Only)
Contact Us
If you are interested in the FAC bioinformatics services, please email [email protected].
If you are interested in the FAC cell line services, please email [email protected].
Directors
Johann E Gudjonsson, MD, PhD
Professor of Dermatology
Professor of Internal Medicine and Research Professor
Mary H Weiser Food Allergy
Medical School
Lam (Alex) C Tsoi, PhD
Associate Professor of Computational Medicine and Bioinformatics
Research Associate Professor
Mary H Weiser Food Allergy
Medical School and Research Associate Professor
Biostatistics
School of Public Health
Mrinal K Sarkar, PhD
Dermatology
Medical School
Research Acknowledgement
It is extremely important that our grant is cited in all publications resulting from the use of UM-SBDRC services and funding. Our productivity and effectiveness as a center are measured in part by the citation of the grant in published work. Please use the following acknowledgement in your publications:
This work utilized Core Services and Pilot or Feasibility project funding supported by grant UM-SBDRC 1P30AR075043 of NIH/NIAMS to the University of Michigan.